PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G196800.1
Common NameB456_001G196800, LOC105800307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 251aa    MW: 27063.3 Da    PI: 4.9403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G196800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003388110123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Gorai.001G196800.1  88 FSCNYCQRKFFSSQALGGHQNAH 110
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.58E-686115No hitNo description
PROSITE profilePS5015711.34488115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKPIIDLEVD APETESDVSS QVASNLYTQE ASVAPSNETN LEPVSLDLTL CFNIDGRDSV  60
GLSFTSTSES SNIDPALRTT ASAIPRVFSC NYCQRKFFSS QALGGHQNAH KRERTLAKRA  120
MRMGIFSDRY ASLSLATLPL HGMATSFRSL GIKAHCLAHQ SFAPATRTPD TRNNAIVEHG  180
YLGLPIFMED DEAELLWPGS FRQIAQAAAG GSNADHPGFV LPGSSNMNFV EVKEPVDLED  240
SSAPDLTLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486802.10.0PREDICTED: zinc finger protein 4
SwissprotQ392638e-57ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A0D2QSY40.0A0A0D2QSY4_G
STRINGPOPTR_0017s02490.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-58zinc finger protein 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]